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Pull requests: nf-core/tools

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Pull requests list

Testing out Reftrace for regex replacement in modules
#3695 opened Jul 30, 2025 by ningyuxin1999 • Draft
4 tasks
2
add a description of allowed enum values to the docs
#3693 opened Jul 29, 2025 by shenkers Loading…
2 of 4 tasks
5
Replace arm profile with arm64 and emulate_amd64 profiles
#3689 opened Jul 28, 2025 by edmundmiller Loading…
1
@edmundmiller
2
Automatically sync the Rocrate and README content during pipelines lint
#3688 opened Jul 28, 2025 by ningyuxin1999 Loading…
4 tasks
4
Validation of meta.yaml in cross-org repos
#3680 opened Jul 15, 2025 by muffato Loading…
4 tasks
@muffato
10
Update dependency textual to v4 - abandoned
#3677 opened Jul 14, 2025 by renovate bot Loading…
1 task
1
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller • Draft
4 tasks
3.4.0
@edmundmiller
3
Update nf-test.yml
#3673 opened Jul 9, 2025 by maxulysse Loading…
4 tasks
7
Update dependency textual to v3.7.0
#3662 opened Jul 8, 2025 by renovate bot Loading…
1 task
2
Fix #3655: Allow dots (.), hyphens (-), and underscores (_) in GitHub usernames
#3658 opened Jul 6, 2025 by Nisarg908 Loading…
4 tasks done
14
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
10
Refactor pipeline downloads command to use nextflow inspect for container detection download nf-core download WIP Work in progress
#3634 opened Jun 23, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
120
Support modules with exec: blocks
#3633 opened Jun 20, 2025 by muffato Loading…
1 of 4 tasks
4
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
4
Refactor module lint tests awaiting-feedback
#3592 opened May 30, 2025 by edmundmiller Loading…
4 tasks
3.4.0
@edmundmiller
10
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch Loading…
2 of 4 tasks
3.4.0
54
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
5
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
43
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.4.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
ProTip! What’s not been updated in a month: updated:<2025-06-30.