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Nextstrain

Real-time tracking of pathogen evolution

211 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 407
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 275 135
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 304 168

Repositories

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Showing 10 of 100 repositories

sphinx-theme Public
A Sphinx theme for Nextstrain's documentation, based on Read The Docs' default theme.

nextstrain/sphinx-theme’s past year of commit activity

HTML 0 MIT 5 5 2 Updated Dec 15, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 275 AGPL-3.0 135 233 (1 issue needs help) 38 Updated Dec 15, 2025
WNV Public
the repository used to build West Nile Virus for nextstrain

nextstrain/WNV’s past year of commit activity

Python 4 1 7 3 Updated Dec 15, 2025
.github Public

nextstrain/.github’s past year of commit activity

Shell 9 11 10 1 Updated Dec 15, 2025
lassa Public
Nextstrain build for Lassa virus

nextstrain/lassa’s past year of commit activity

Python 1 5 9 3 Updated Dec 15, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 42 39 9 16 Updated Dec 15, 2025
forecasts-ncov Public
SARS-CoV-2 variant growth rates and frequency forecasts

nextstrain/forecasts-ncov’s past year of commit activity

Python 9 3 12 4 Updated Dec 15, 2025
dengue Public
Nextstrain build for dengue virus

nextstrain/dengue’s past year of commit activity

Python 12 12 17 (1 issue needs help) 2 Updated Dec 15, 2025
docker-base Public
Docker image build for nextstrain/base

nextstrain/docker-base’s past year of commit activity

Shell 12 7 8 3 Updated Dec 15, 2025
nipah Public

nextstrain/nipah’s past year of commit activity

Python 1 0 3 1 Updated Dec 15, 2025

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