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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. rse-grand-challenge rse-grand-challenge Public

    A platform for end-to-end development of machine learning solutions in biomedical imaging

    Python 183 59

  2. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 113 28

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 106 31

  4. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 101 26

  5. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 78 12

  6. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 66 10

Repositories

Showing 10 of 230 repositories
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 78 22 (1 issue needs help) 9 Updated Dec 15, 2025
  • rse-grand-challenge Public

    A platform for end-to-end development of machine learning solutions in biomedical imaging

    DIAGNijmegen/rse-grand-challenge’s past year of commit activity
    Python 183 Apache-2.0 59 46 8 Updated Dec 15, 2025
  • oncology-uls-plus Public

    Code for the paper "ULS+: Data-driven Model Adaptation Enhances Lesion Segmentation"

    DIAGNijmegen/oncology-uls-plus’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 12, 2025
  • llm_extractinator Public

    This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.

    DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Dec 9, 2025
  • rse-grand-challenge-dicom-de-identifier Public

    A Python package that de-identifies a (set of) DICOM files using a preset procedure

    DIAGNijmegen/rse-grand-challenge-dicom-de-identifier’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 9, 2025
  • rse-grand-challenge-metrics Public

    evalutils helps users create extensions for grand-challenge.org

    DIAGNijmegen/rse-grand-challenge-metrics’s past year of commit activity
    Python 23 MIT 9 0 0 Updated Dec 9, 2025
  • rse-grand-challenge-dicom-de-id-procedure Public

    DICOM de-identification Procedure for Grand-Challenge.org

    DIAGNijmegen/rse-grand-challenge-dicom-de-id-procedure’s past year of commit activity
    Python 1 Apache-2.0 0 0 1 Updated Dec 9, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Dec 9, 2025
  • nnUNet-for-pathology Public Forked from MIC-DKFZ/nnUNet

    Adapted nnUNet framework with additional features to suit the requirements for pathology applications

    DIAGNijmegen/nnUNet-for-pathology’s past year of commit activity
    Python 22 Apache-2.0 2,248 0 0 Updated Dec 8, 2025
  • rse-workshop-challenge-masterclass Public

    Files for the Challenge-Hosting Masterclass

    DIAGNijmegen/rse-workshop-challenge-masterclass’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Dec 8, 2025

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