docs: comprehensive documentation review and corrections

- Fix tool count from 23 to 20 (actual implementation count)
- Update version from 0.2.6 to 0.3.4 (current release version)
- Correct moth CLI commands: test/list to run/validate/report
- Fix project name typos: CodeCodePrism to CodePrism
- Remove outdated architectural references (Neo4j, Kafka, Redis)
- Update GitHub repo URL from rustic-ai/ to rustic-ai/codeprism
- Align all documentation with current implementation

Documentation review covered:
- README.md: Tool counts, architecture diagrams
- docs/ARCHITECTURE.md: Project name fixes, outdated service removal
- codeprism-docs/docs/mcp-server/overview.md: Version and tool count updates
- crates/mandrel-mcp-th/README.md: CLI command corrections
- docs/DEVELOPER.md: Service dependency removal, setup simplification

All documentation now accurately reflects the current codebase state.

Author: milliondreams

README.md

@@ -23,7 +23,7 @@ A production-ready, high-performance code intelligence server implementing the M
 
 ## 🚀 Current Status: Production Ready
 
-**✅ 23 Production-Ready Tools** - 100% success rate, no failed tools  
+**✅ 20 Production-Ready Tools** - 100% success rate, no failed tools  
 **✅ Full MCP Compliance** - JSON-RPC 2.0 with complete protocol implementation  
 **✅ Multi-Language Support** - JavaScript/TypeScript + Python with advanced analysis  
 **✅ Semantic APIs** - User-friendly parameter names, no cryptic IDs required  
@@ -46,7 +46,7 @@ Dragonscale Industries Inc supports the development of cutting-edge AI-powered c
 
 ## 🌟 Key Features
 
-### **23 Advanced Analysis Tools**
+### **20 Advanced Analysis Tools**
 - **Core Navigation** (4 tools): Repository stats, symbol explanation, path tracing, dependency analysis
 - **Search & Discovery** (4 tools): Symbol search, content search, file finding, content statistics  
 - **Analysis Tools** (11 tools): Complexity analysis, data flow tracing, pattern detection, inheritance analysis, security analysis, performance analysis, API surface analysis, unused code detection, duplicate detection, transitive dependencies, decorators
@@ -81,7 +81,7 @@ Dragonscale Industries Inc supports the development of cutting-edge AI-powered c
                                                  │
                                     ┌────────────┴────────────┐
                     ┌───────────────▼───────────────▼─────────────────┐
-                    │              23 MCP Tools                      │
+                    │              20 MCP Tools                      │
                     │  ┌─────────────┐  ┌─────────────────────────┐   │
                     │  │    Core     │  │     Search & Discovery  │   │
                     │  │ Navigation  │  │        4 tools          │   │
@@ -338,7 +338,7 @@ Your support helps us:
 - **Query Speed**: Sub-millisecond for most symbol and content searches
 
 **Test Coverage:**
-- **23/23 tools working** (100% success rate)
+- **20/20 tools working** (100% success rate)
 - **425 comprehensive tests** across all crates and parser debugging tools
 - **Comprehensive testing** against real-world repositories
 - **Full MCP protocol compliance** verified

codeprism-docs/docs/mcp-server/overview.md

@@ -14,12 +14,12 @@ CodePrism provides a **production-ready MCP server** that enables AI assistants
 
 ### 🔌 **Complete MCP Compliance**
 - **Resources**: Repository files, code symbols, and graph data
-- **Tools**: 23 production-ready code analysis and navigation tools  
+- **Tools**: 20 production-ready code analysis and navigation tools  
 - **Prompts**: Code analysis templates and workflow guidance
 - **Real-time Updates**: Live resource and tool updates
 
 ### 🚀 **Production-Ready Capabilities**
-- **100% Tool Success Rate** - All 23 tools tested and production-ready
+- **100% Tool Success Rate** - All 20 tools tested and production-ready
 - **Semantic Parameter Support** - Human-readable names instead of cryptic IDs
 - **Environment Variable Integration** - Automatic repository detection
 - **Context-Enhanced Responses** - Source code snippets included
@@ -30,7 +30,7 @@ CodePrism provides a **production-ready MCP server** that enables AI assistants
 ```json
 {
   "name": "codeprism-mcp-server",
-  "version": "0.2.6",
+  "version": "0.3.4",
   "capabilities": {
     "resources": {
       "subscribe": true,
@@ -74,7 +74,7 @@ CodePrism provides a **production-ready MCP server** that enables AI assistants
 - `codeprism://architecture/patterns` - Detected design patterns and structures
 - `codeprism://architecture/dependencies` - High-level dependency analysis
 
-## Production Tools (23 Available)
+## Production Tools (20 Available)
 
 ### Core Navigation & Understanding (4 tools)
 1. **`repository_stats`** - Get comprehensive statistics about the repository

crates/mandrel-mcp-th/README.md

@@ -31,16 +31,16 @@ moth --version
 
 ```bash
 # Run tests from a specification file
-moth test my-server.yaml
+moth run my-server.yaml
 
 # Validate a test specification
 moth validate my-server.yaml
 
-# List available tests
-moth list my-server.yaml --detailed
+# Generate reports from test results
+moth report --format html --output results.html
 
 # Show version information
-moth version
+moth --version
 ```
 
 ### Test Specification Example
@@ -94,19 +94,16 @@ tools:
 
 ## CLI Commands
 
-### `moth test`
+### `moth run`
 
 Run test specifications against MCP servers.
 
 ```bash
-moth test [OPTIONS] <SPEC>
+moth run [OPTIONS] <SPEC>
 
 Options:
-  -o, --output-file <FILE>     Output file for test results
-  -f, --fail-fast              Stop execution on first failure
-  -F, --filter <PATTERN>       Test filter pattern
-  -c, --concurrency <N>        Maximum concurrent tests [default: 4]
-  --output <FORMAT>            Output format [default: json] [possible: json, html, junit, text]
+  --output <DIR>               Output directory for test results
+  --formats <FORMAT>           Output formats (json, html, junit)
 ```
 
 ### `moth validate`
@@ -117,15 +114,16 @@ Validate test specification syntax and structure.
 moth validate <SPEC>
 ```
 
-### `moth list`
+### `moth report`
 
-List available tests in a specification.
+Generate reports from test execution results.
 
 ```bash
-moth list [OPTIONS] <SPEC>
+moth report [OPTIONS]
 
 Options:
-  -d, --detailed               Show detailed test information
+  --format <FORMAT>            Report format (json, html, junit)
+  --output <FILE>              Output file path
 ```
 
 ## Library Usage

docs/ARCHITECTURE.md

@@ -1,6 +1,6 @@
 # Architecture Guide
 
-This document describes the high-level architecture, design decisions, and implementation details of CodeCodePrism.
+This document describes the high-level architecture, design decisions, and implementation details of CodePrism.
 
 **🚨 ARCHITECTURAL PIVOT - December 2024**
 
@@ -19,13 +19,13 @@ After detailed review against official MCP (Model Context Protocol) documentatio
 
 ## System Overview
 
-CodeCodePrism is a **MCP-compliant** graph-first code intelligence system designed to provide real-time, accurate code understanding for LLM assistants. The system implements the Model Context Protocol (JSON-RPC 2.0) specification to integrate seamlessly with MCP clients like Claude Desktop, Cursor, and VS Code GitHub Copilot.
+CodePrism is a **MCP-compliant** graph-first code intelligence system designed to provide real-time, accurate code understanding for LLM assistants. The system implements the Model Context Protocol (JSON-RPC 2.0) specification to integrate seamlessly with MCP clients like Claude Desktop, Cursor, and VS Code GitHub Copilot.
 
 ### **MCP-Optimized Architecture**
 
 ```
 ┌─────────────────────────────────────────────────────────────┐
-│                   MCP-Compliant CodeCodePrism                      │
+│                   MCP-Compliant CodePrism                      │
 ├─────────────────────────────────────────────────────────────┤
 │  MCP Clients                                                │
 │  ┌─────────────┐ ┌─────────────┐ ┌─────────────┐           │
@@ -36,7 +36,7 @@ CodeCodePrism is a **MCP-compliant** graph-first code intelligence system design
 │         └───────────────┼───────────────┘                 │
 │                         ▼ (JSON-RPC 2.0)                 │
 │  ┌─────────────────────────────────────────────────────────┐ │
-│  │              CodeCodePrism MCP Server                           │ │
+│  │              CodePrism MCP Server                           │ │
 │  │  ┌─────────────┐ ┌─────────────┐ ┌─────────────┐       │ │
 │  │  │ Resources   │ │   Tools     │ │  Prompts    │       │ │
 │  │  │ Manager     │ │ Manager     │ │ Manager     │       │ │
@@ -86,7 +86,7 @@ CodeCodePrism is a **MCP-compliant** graph-first code intelligence system design
 
 ### 1. **MCP Protocol Compliance**
 
-CodeCodePrism strictly adheres to the Model Context Protocol specification:
+CodePrism strictly adheres to the Model Context Protocol specification:
 
 - **JSON-RPC 2.0**: All communication uses proper JSON-RPC 2.0 format
 - **Initialization Handshake**: Proper capability negotiation
@@ -103,7 +103,7 @@ Based on MCP best practices:
 
 ### 3. **Graph-First Design**
 
-Maintains the core strength of CodeCodePrism:
+Maintains the core strength of CodePrism:
 - **Structural Understanding**: Relationships between functions, classes, and modules
 - **Cross-Language Analysis**: Unified representation across programming languages
 - **Efficient Queries**: Graph traversal for code navigation and analysis
@@ -614,7 +614,7 @@ pub struct HealthStatus {
 
 ## Conclusion
 
-This **MCP-compliant architecture** provides a robust, performant, and standards-compliant foundation for CodeCodePrism that:
+This **MCP-compliant architecture** provides a robust, performant, and standards-compliant foundation for CodePrism that:
 
 1. **Meets MCP Requirements**: Full JSON-RPC 2.0 compliance with proper transport
 2. **Optimizes for Simplicity**: Removed unnecessary complexity for better performance

docs/DEVELOPER.md

@@ -1,6 +1,6 @@
 # Developer Guide
 
-This guide covers the development workflow, architecture, and best practices for contributing to CodeCodePrism.
+This guide covers the development workflow, architecture, and best practices for contributing to CodePrism.
 
 ## Table of Contents
 
@@ -19,15 +19,14 @@ This guide covers the development workflow, architecture, and best practices for
 ### Prerequisites
 
 - **Rust**: 1.82+ with `rustfmt` and `clippy`
-- **Docker**: For development services (Neo4j, Kafka)
 - **Make**: For build automation
 - **Git**: Version control
 
 ### Initial Setup
 
 ```bash
 # Clone the repository
-git clone https://github.com/rustic-ai /codeprism
+git clone https://github.com/rustic-ai/codeprism
 cd codeprism
 
 # Install Rust toolchain components
@@ -38,41 +37,21 @@ cargo install cargo-tarpaulin  # Code coverage
 cargo install cargo-watch     # File watching
 cargo install cargo-expand    # Macro expansion
 
-# Start development services
-make dev-up
+# Build the project
+cargo build --release
 
 # Verify setup
 make check
 ```
 
-### Development Services
+### Development Environment
 
-The project uses Docker Compose for development dependencies:
+CodePrism uses a simplified in-memory architecture without external services:
 
-```yaml
-# docker-compose.yml
-services:
-  neo4j:
-    image: neo4j:5.15
-    ports: ["7474:7474", "7687:7687"]
-    environment:
-      NEO4J_AUTH: neo4j/password
-      
-  kafka:
-    image: confluentinc/cp-kafka:latest
-    ports: ["9092:9092"]
-    
-  redis:
-    image: redis:7-alpine
-    ports: ["6379:6379"]
-```
-
-Start services:
-```bash
-make dev-up    # Start all services
-make dev-down  # Stop all services
-make dev-logs  # View service logs
-```
+- **In-Memory Graph Store**: Fast local graph storage using DashMap
+- **File System Watcher**: Real-time file change detection
+- **MCP Protocol**: JSON-RPC 2.0 over stdio transport
+- **Optional Persistence**: File-based caching for faster startup
 
 ## Project Structure