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Update list of notebook in bash script
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run_nbval.sh

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# $ ./run_nbval.sh
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# List notebooks that nbval should run
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declare -a NOTEBOOKS=(\
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"00 Importing large mib datasets.ipynb"\
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"01 GaAs Nanowire - Data Inspection - Preprocessing - Unsupervised Machine Learning.ipynb"\
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"02 GaAs Nanowire - Phase Mapping - Orientation Mapping.ipynb"\
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"03 Reference Standards - Dimension Calibrations - Rotation Calibrations.ipynb"\
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"04 Simulate Data - Phase Mapping - Orientation Mapping.ipynb"\
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"05 Simulate Data - Strain Mapping.ipynb"\
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"06 Nanocrystal segmentation in SPED data - Demonstration on partly overlapping MgO cubes.ipynb"\
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"07 Azimuthal Integration Using pyFAI Detector.ipynb"\
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"08 Pair Distribution Function Analysis.ipynb"\
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"09 Angular Correlations of Amorphous Materials.ipynb"\
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"10 STEM DPC Analysis of Magnetic Sample.ipynb"\
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"11 Accelerated orientation mapping with template matching.ipynb"\
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"12 MolecularGlassOrientationMapping.ipynb"\
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)
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NOTEBOOKS=(*.ipynb)
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echo "List of Notebooks:"
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for nb in "${NOTEBOOKS[@]}"; do
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echo $nb
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done
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# clean notebooks to remove outputs
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nb-clean clean "${NOTEBOOKS[@]}"

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