Testing: Clean notebooks before testing

CSSFrancis · CSSFrancis · commit 11fae0bddc8b · 2023-11-06T15:39:22.000-06:00
diff --git a/.github/workflows/test_workbooks.yml b/.github/workflows/test_workbooks.yml
@@ -29,6 +29,7 @@ jobs:
         run: |
           pip install pyxem
           pip install -U nbval pyopencl
+          pip install nb-clean
           pip install hyperspy[gui-jupyter]
 
       - name: Display Python, pip and package versions
diff --git a/run_nbval.sh b/run_nbval.sh
@@ -21,5 +21,7 @@ declare -a NOTEBOOKS=(\
   "12 MolecularGlassOrientationMapping.ipynb"\
 )
 
+# clean notebooks to remove outputs
+nb-clean clean "${NOTEBOOKS[@]}"
 # Test with nbval
 pytest -v --nbval "${NOTEBOOKS[@]}" --nbval-lax --nbval-current-env

Original file line number	Diff line number	Diff line change
`@@ -21,5 +21,7 @@ declare -a NOTEBOOKS=(\`
`21`	`21`	`"12 MolecularGlassOrientationMapping.ipynb"\`
`22`	`22`	`)`
`23`	`23`
	`24`	`+# clean notebooks to remove outputs`
	`25`	`+nb-clean clean "${NOTEBOOKS[@]}"`
`24`	`26`	`# Test with nbval`
`25`	`27`	`pytest -v --nbval "${NOTEBOOKS[@]}" --nbval-lax --nbval-current-env`