Merge pull request #40 from nipreps/talks/bootcamp-program

oesteban · web-flow · commit 6d0b2a16f29b · 2024-09-05T17:21:53.000+02:00
DOC: Fill out the program (Geneva bootcamp)
diff --git a/docs/assets/fmriprep-bootcamp-geneva2024/home/index.html b/docs/assets/fmriprep-bootcamp-geneva2024/home/index.html
@@ -360,6 +360,16 @@
 	  text-align: right;
       }
 
+      .program-table td:nth-child(2) {
+        font-size: 1.2em;
+        
+      }
+      .program-table td:nth-child(1) {
+        font-size: 0.9em;
+        color: #999;
+        padding-right: 20px;
+      }
+
     </style>
   </head>
   <body>
@@ -402,14 +412,14 @@
   https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/
 </a>
 
-<br />
 <br />
 
-.large[<i class="fa-solid fa-house"></i>]
-
-## fMRIPrep Bootcamp
+## CIBM's First fMRIPrep Bootcamp
 
+CMU, Geneva, September 9-11, 2024
 
+<br />
+.large[<i class="fa-solid fa-play"></i> Get started]
 ]
 
 ???
@@ -429,7 +439,7 @@
 
 ---
 
-# Program
+# Program | Day 1
 
 .right-column3.center[
 <a href="https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/#2">
@@ -439,16 +449,91 @@
 </a>
 ]
 
+<br />
 .left-column3[
+.program-table[
+| | |
+|---:|---|
+|  8h30 | Welcome & breakfast |
+|  9h00 | Opening |
+|  9h30 | [Overview of the fMRI neuroimaging pipeline & <i>fMRIPrep</i>](/assets/fmriprep-bootcamp-geneva2024/day1-01-fmriprep-primer) |
+| 10h30 | Coffee break |
+| 10h45 | [The Brain Imaging Data Structure (BIDS)](/assets/fmriprep-bootcamp-geneva2024/day1-02-bids) |
+| 11h30 | [BIDS hands-on](/assets/fmriprep-bootcamp-geneva2024/day1-03-bids-convert-a-dataset) |
+| 12h00 | Lunch break |
+| 13h30 | Hands-on: making data available on HPC |
+| 14h30 | Containers |
+| 15h00 | Coffee break |
+| 15h15 | Hands-on: Apptainer within HPC Unige |
+| 16h00 | Hands-on: run fMRIPrep on the dataset |
+| 17h00 | End |
+]]
 
-.large[
+???
 
-* 
 
+---
+
+# Program | Day 2
+
+.right-column3.center[
+<a href="https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/#3">
+  <img src="images/qr-talk-url.svg" alt="workflow" style="width: 100%" />
+  <br />
+  https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/
+</a>
+]
+
+<br />
+.left-column3[
+.program-table[
+| | |
+|---:|---|
+|  8h30 | Welcome & breakfast |
+|  9h00 | Execution forensics: did it work? |
+|  9h30 | Resource planning, parallelization |
+| 10h30 | Coffee break |
+| 10h45 | Analysis of the *mixed* task |
+| 12h00 | Lunch break |
+| 13h30 | MRIQC and QA/QC |
+| 15h00 | Coffee break |
+| 15h15 | Hands-on: Running *fMRIPrep* on your data on cluster |
+| 16h00 | Preparation of the hackathon (groups, projects) |
+| 17h00 | End |
 ]]
 
 ???
 
+---
+
+# Program | Day 3 (Hackathon)
+
+.right-column3.center[
+<a href="https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/#3">
+  <img src="images/qr-talk-url.svg" alt="workflow" style="width: 100%" />
+  <br />
+  https://www.nipreps.org/assets/fmriprep-bootcamp-geneva2024/home/
+</a>
+]
+
+
+<br />
+.left-column3[
+.program-table[
+| | |
+|---:|---|
+|  8h30 | Welcome & breakfast |
+|  9h00 | Project pitches |
+| | Coffee break |
+| | **Hacking!** |
+| 12h00 | Lunch break |
+| 13h00 | **Hacking!** |
+| 15h00 | Coffee break |
+| 15h15 | Round table and showcasing results |
+| 16h30 | End |
+]]
+
+???
 
 </textarea>
     <script src="https://remarkjs.com/downloads/remark-latest.min.js"></script>
