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Fix old reference
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modules/subworkflows/preprocess.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,7 @@ workflow PREPROC {
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// split and group target
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splittgt(ch_target)
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tgt_lift = splittgt.out.tgt_lift_ch
37-
if ( params.aligner.toLowerCase() == 'gsalign' || (params.aligner == 'minimap2' && params.mm2_full_alignment) ){
37+
if ( params.aligner.toLowerCase() == 'gsalign' || (params.aligner == 'minimap2' && params.minimap2_full_alignment) ){
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ch_fragm_tgt_out = splittgt.out.tgtsplit_ch
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ch_fragm_tgt_fa = splittgt.out.tgtfas_ch
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.flatten()

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