Merge pull request #5 from dennisbrookner/paper

Add pre-print and other routine updates

Author: dennisbrookner

_config.yml

@@ -6,4 +6,4 @@ gems:
 
 theme: jekyll-theme-minimal
 
-port: 4603
+port: 4605

_layouts/default.html

@@ -7,6 +7,7 @@
   <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
   <script src="https://use.fontawesome.com/72b03f0302.js"></script>
 
+
   <link rel="icon"
     href="data:image/svg+xml,<svg xmlns=%22http://www.w3.org/2000/svg%22 viewBox=%220 0 100 100%22><text y=%22.9em%22 font-size=%2290%22>🧪</text></svg>">
 

assets/css/handmade.css

@@ -13,6 +13,7 @@ Declare some colors that I can use throughout
   --favicon-hover-color: #808080;
   --hr-color: rgba(0, 0, 0, .1);
   --vr-color: #dee2e6;
+  --scrollbar-thumb-color: #adbecf;
 }
 
 body {
@@ -26,6 +27,15 @@ body {
   background-color: var(--page-background);
 }
 
+::-webkit-scrollbar {
+  background-color: var(--page-background);
+}
+
+::-webkit-scrollbar-thumb {
+  background: var(--scrollbar-thumb-color);
+  border-radius: 10px;
+}
+
 h1,
 h2,
 h3,
@@ -302,7 +312,9 @@ These two classes allow part of a page to scroll and another part to not scroll.
 }
 
 .mh-100 {
-  max-height: 100%
+  max-height: 100%;
+  scrollbar-color: var(--page-background) white;
+
 }
 
 /* Class for the active and inactive experiences */

index.md

@@ -5,7 +5,7 @@ layout: flexcolumns
 
 ## About Me
 
-I'm a fourth-year Ph.D. student in [Prof. Doeke Hekstra's lab](https://hekstralab.fas.harvard.edu) in the Harvard Department of Molecular & Cellular Biology. My research involves using X-ray crystallography to explore how protein structure and dynamics contribute to function. After graduate school, I plan to continue working in biochemistry, biophysics, or structural biology, in either academia or industry.
+I'm a fifth-year Ph.D. student in [Prof. Doeke Hekstra's lab](https://hekstralab.fas.harvard.edu) in the Harvard Department of Molecular & Cellular Biology. My research involves using X-ray crystallography to explore how protein structure and dynamics contribute to function. After graduate school, I plan to continue working in biochemistry, biophysics, or structural biology, in either academia or industry.
 
 ### Computational interests  
 

resume.md

@@ -39,6 +39,10 @@ Investigation of cellular responses to partial protein unfolding through a varie
 
 ## Publications
 
+<span class='skill paper hekstra'>**[MatchMaps: Non-isomorphous difference maps for X-ray crystallography](https://doi.org/10.1101/2023.09.01.555333)**, *bioRxiv (pre-print)*, 2023</span>
+
+<span class='skill paper hekstra'>**[Resolving conformational changes that mediate a two-step catalytic mechanism in a model enzyme](https://doi.org/10.1101/2023.06.02.543507)**, *bioRxiv (pre-print)*, 2023</span>
+
 <span class='skill paper loria'>**[Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B](https://pubs.acs.org/doi/10.1021/jacs.9b04470)**, *JACS*, 2019</span>
 
 <span class='skill paper crews'>**[Targeted protein unfolding uncovers a Golgi-specific transcriptional stress response](https://www.molbiolcell.org/doi/10.1091/mbc.E17-11-0693)**, *MBoC*, 2018 </span>