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# Updated scCATCH 2.0
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[![R >3.5](https://img.shields.io/badge/R-%3E3.5-brightgreen.svg)](https://www.r-project.org/) <a href='#devtools'>![installed with devtools](https://img.shields.io/badge/installed%20with-devtools-blue.svg)</a> [![source package scCATCH__2.0.tar.gz](https://img.shields.io/badge/source%20package-scCATCH__2.0.tar.gz-yellowgreen.svg)](https://github.com/ZJUFanLab/scCATCH_performance_comparison/blob/master/scCATCH_2.0.tar.gz)
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[![R >3.5](https://img.shields.io/badge/R-%3E3.5-brightgreen.svg)](https://www.r-project.org/) <a href='#devtools'>![installed with devtools](https://img.shields.io/badge/installed%20with-devtools-blue.svg)</a>
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### Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
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<font size = 3>2. scCATCH can also be used to annotate scRNA-seq data from __tissue with cancer.__</font>
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# Install
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`devtools::install_github('ZJUFanLab/scCATCH')`
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[![source package scCATCH__2.0.tar.gz](https://img.shields.io/badge/source%20package-scCATCH__2.0.tar.gz-yellowgreen.svg)](https://github.com/ZJUFanLab/scCATCH_performance_comparison/blob/master/scCATCH_2.0.tar.gz)
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```
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# download the source package of scCATCH_2.0.tar.gz and install it
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install.packages(pkgs = 'scCATCH_2.0.tar.gz')
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```
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or
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```
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# install devtools and install scCATCH
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install.packages(pkgs = 'devtools')
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devtools::install_github('ZJUFanLab/scCATCH')
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```
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# Usage
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